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TopHat finds known and novelĮxon-exon splice junctions and is extremely fast due to its use of the Bowtie2 aligner. Bowtie and Bowtie2 were developed by Ben LangmeadĪ spliced alignment system for RNA-seq experiments. Genome with a Burrows-Wheeler index to keep its memory footprint small:Ģ.3 GB for the human genome. Sequences to the human genome at a rate of about 25 million reads per With high throughput (~1.5 to 2 million reads per second with the human reference genome in a 4-GPU computer), it is well suited to large-scale NGS data processing.Īn ultrafast, memory-efficient short read aligner that aligns short DNA Next-generation sequence alignment softwareĪrioc is a GPU-accelerated DNA short-read aligner for WGS and WGBS reads. If you're looking for the CHESS human gene database, it is at /chess Genome Assembly and Large-Scale Genome alignment.

Metagenomics Classification, Abundance Estimation and Visualization.

Next-Generation Sequence Alignment Software.

Notes: The current error page you are seeing can be replaced by a custom error page by modifying the "defaultRedirect" attribute of the application's configuration tag to point to a custom error page URL. This tag should then have its "mode" attribute set to "Off". It could, however, be viewed by browsers running on the local server machine.ĭetails: To enable the details of this specific error message to be viewable on remote machines, please create a tag within a "web.config" configuration file located in the root directory of the current web application. The current custom error settings for this application prevent the details of the application error from being viewed remotely (for security reasons). Runtime Error Description: An application error occurred on the server. Runtime Error Server Error in '/' Application.